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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BS_037093F0B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 344aa MW: 35444.4 Da PI: 8.6945 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.6 | 5.7e-38 | 111 | 168 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCds+ntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s Traes_5BS_037093F0B.1 111 TLRCPRCDSANTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 168 679***************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-31 | 94 | 164 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.6E-31 | 112 | 166 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.273 | 112 | 166 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 114 | 150 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MVFSSFPIFL DPPSWAQMQQ QPLQCFMGGG GGSEHQHHQL IPASSGQLAP LPDVPGNTAA 60 SAPPVAGSSS ASLQLVVSGQ QGNPGEQPPR PSVSMTERAR MARVPLPEPG TLRCPRCDSA 120 NTKFCYFNNY SLSQPRHFCK ACRRYWTRGG ALRNVPVGGG CRRNTKRSSK KSSRQGQGQG 180 GGGAVAAATS SSSTTSTSTT TSAAAATAAD VIASMQALPH HLGGLPAAAA LEASLEGYHS 240 HSHHQHHNLP FLPPQFLQQG LHGYHIADGD IGSQLADGFP RGVASGLLAQ LASIKMEEHG 300 AGAGGAGGGF VGAHEQYWPG SGGGGGWPTE FLSGFSSSSS GNVM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371779 | 0.0 | AK371779.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2141F19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008668091.1 | 1e-109 | PREDICTED: uncharacterized protein LOC100273972 isoform X1 | ||||
Swissprot | Q9M2U1 | 7e-41 | DOF36_ARATH; Dof zinc finger protein DOF3.6 | ||||
TrEMBL | W5FL16 | 0.0 | W5FL16_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_74620.1 | 1e-173 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 4e-38 | Dof family protein |
Publications ? help Back to Top | |||
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