PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BS_037093F0B.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 344aa MW: 35444.4 Da PI: 8.6945

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BS_037093F0B.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.6	5.7e-38	111	168	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCds+ntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s Traes_5BS_037093F0B.1 111 TLRCPRCDSANTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 168 679***************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	94	164	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-31	112	166	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.273	112	166	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	114	150	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MVFSSFPIFL DPPSWAQMQQ QPLQCFMGGG GGSEHQHHQL IPASSGQLAP LPDVPGNTAA 60 SAPPVAGSSS ASLQLVVSGQ QGNPGEQPPR PSVSMTERAR MARVPLPEPG TLRCPRCDSA 120 NTKFCYFNNY SLSQPRHFCK ACRRYWTRGG ALRNVPVGGG CRRNTKRSSK KSSRQGQGQG 180 GGGAVAAATS SSSTTSTSTT TSAAAATAAD VIASMQALPH HLGGLPAAAA LEASLEGYHS 240 HSHHQHHNLP FLPPQFLQQG LHGYHIADGD IGSQLADGFP RGVASGLLAQ LASIKMEEHG 300 AGAGGAGGGF VGAHEQYWPG SGGGGGWPTE FLSGFSSSSS GNVM

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MVFSSFPIFL DPPSWAQMQQ QPLQCFMGGG GGSEHQHHQL IPASSGQLAP LPDVPGNTAA  60
SAPPVAGSSS ASLQLVVSGQ QGNPGEQPPR PSVSMTERAR MARVPLPEPG TLRCPRCDSA  120
NTKFCYFNNY SLSQPRHFCK ACRRYWTRGG ALRNVPVGGG CRRNTKRSSK KSSRQGQGQG  180
GGGAVAAATS SSSTTSTSTT TSAAAATAAD VIASMQALPH HLGGLPAAAA LEASLEGYHS  240
HSHHQHHNLP FLPPQFLQQG LHGYHIADGD IGSQLADGFP RGVASGLLAQ LASIKMEEHG  300
AGAGGAGGGF VGAHEQYWPG SGGGGGWPTE FLSGFSSSSS GNVM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK371779	0.0	AK371779.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2141F19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008668091.1	1e-109	PREDICTED: uncharacterized protein LOC100273972 isoform X1
Swissprot	Q9M2U1	7e-41	DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBL	W5FL16	0.0	W5FL16_WHEAT; Uncharacterized protein
STRING	MLOC_74620.1	1e-173	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	4e-38	Dof family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]